{"id":12,"date":"2015-08-13T15:57:33","date_gmt":"2015-08-13T23:57:33","guid":{"rendered":"http:\/\/research.engineering.ucdavis.edu\/mrg\/?page_id=12"},"modified":"2015-08-20T10:03:37","modified_gmt":"2015-08-20T18:03:37","slug":"publications","status":"publish","type":"page","link":"https:\/\/research.engineering.ucdavis.edu\/mrg\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"

2013<\/h2>\n
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2012<\/h2>\n
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  • Hwang MS, Lindenmuth BE, McDonald KA, Falk BW. “Bipartite and tripartite Cucumber mosaic virus-based vectors for producing the Acidothermus cellulolyticus endo-1,4-beta-glucanase and other proteins in non-transgenic plants.” BMC Biotechnol.<\/u> Sep 21;12(1):66. (2012).<\/li>\n
  • Ting-Kuo Huang and Karen A. McDonald, “Bioreactor systems for in vitro production of foreign proteins using plant cell cultures.” Biotechnol Adv. Mar-Apr;30(2):398-409. (2012).<\/li>\n<\/ul>\n<\/div>\n

    2011<\/h2>\n
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    • Sang-Kyu Jung and Karen A. McDonald, “Visual Gene Developer: a fully programmable bioinformatics software for synthetic gene optimization”, BMC Bioinformatics, 12(1): 340 (2011).<\/li>\n
    • Lucas Arzola, Junxing Chen, Kittipong Rattanaporn, James M. Maclean and Karen A. McDonald, “Transient Co-Expression of Post-Transcriptional Gene Silencing Suppressors for Increased in Planta Expression of a Recombinant Anthrax Receptor Fusion Protein”, Int. J. Mol. Sci, 12: 4975-4990 (2011).<\/li>\n
    • Benjamin E. Lindenmuth and Karen A. McDonald, “Production and characterization of Acidothermus cellulolyticus endoglucanase in Pichia pastoris”, Protein Expression and Purification, 77(2): 153-158 (2011).<\/li>\n<\/ul>\n<\/div>\n

      2010<\/h2>\n
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      • Ting-Kuo Huang, Michael A. Plesha, and Karen A. McDonald, “Semicontinuous Bioreactor Production of a Recombinant Human Therapeutic Protein Using a Chemically Inducible Viral Amplicon Expression System in Transgenic Plant Cell Suspension Cultures”, Biotechnology and Bioengineering, 106(3): 408-421 (2010)<\/li>\n<\/ul>\n<\/div>\n

        2009<\/h2>\n
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        • Ting-Kuo Huang and Karen A. McDonald, \u201cBioreactor Engineering for Recombinant Protein Production in Plant Cell Suspension Cultures \u201c, Biochemical Engineering Journal, 45: 168-184 (2009).<\/li>\n
        • Michael A. Plesha, Ting-Kuo Huang, Abhaya M. Dandekar, Bryce W. Falk, and Karen A. McDonald, \u201cOptimization of the Bioprocessing Conditions for Scale-Up of Transient Production of a Heterologous Protein in Plants Using a Chemically Inducible Viral Amplicon Expression System\u201d, Biotechnology Progress, 25(3): 722-734 (2009).<\/li>\n
        • Ting-Kuo Huang, Michael A. Plesha, Bryce W. Falk, Abhaya M. Dandekar, and Karen A. McDonald, \u201cBioreactor Strategies for Improving Production Yield and Functionality of a Recombinant Human Protein in Transgenic Tobacco Cell Cultures\u201d, Biotechnology and Bioengineering, 102(2): 508-520 (2009).<\/li>\n<\/ul>\n<\/div>\n

          2007<\/h2>\n
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          • Michael A. Plesha, Ting-Kuo Huang, Abhaya M. Dandekar, Bryce W. Falk and Karen A. McDonald, “High-Level Transient Production of a Heterologous Protein in Plants by Optimizing Induction of a Chemically Inducible Viral Amplicon Expression System”, Biotechnology Progress, 23(6): 1277-1285 (2007).<\/li>\n
          • Elizabeth Zapalac and\u00a0 Karen A. McDonald, \u201cEconomic and Environmental Assessment of the Purification of Alpha-1-Antitrypsin from Transgenic Plant Cell Suspension Cultures. In Development of Sustainable Bioprocesses – Modeling and Assessment, Eds.; Heinzle, E.; Biwer, A., Wiley (2007).<\/li>\n<\/ul>\n<\/div>\n

            2006<\/h2>\n
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            • Mysore R. Sudarshana, Michael A. Plesha, Sandra Uratsu, Bryce W. Falk, Abhaya M. Dandekar, Ting-Kuo Huang, Karen A. McDonald, \u201cA Chemically Inducible Cucumber mosaic virus Amplicon System for Expression of Heterologous Proteins in Plant Tissues\u201d Plant Biotechnology Journal, 4: 551-559 (2006).<\/li>\n
            • Lawrence D. Joh, Karen A. McDonald and Jean S. VanderGheynst.\u00a0 Evaluating Extraction And Storage of a Recombinant Protein Produced in Agroinfiltrated Lettuce. Biotechnology Progress. 22: 723-730 (2006).<\/li>\n<\/ul>\n<\/div>\n

              2005<\/h2>\n
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              • Karen A. McDonald, Lo Ming Hong, David M. Trombly, Qing Xie and Alan P. Jackman, \u201cProduction of\u00a0 Human a-1-Antitrypsin from Transgenic Rice Cell Culture in a Membrane Bioreactor\u201d, Biotechnology Progress 21: 728-734 (2005).<\/li>\n
              • Melody M. Trexler, Karen A. McDonald and Alan P. Jackman, \u201cA Cyclical Semicontinuous Process for Production of Human a1-Antitrypsin Using Metabolically Induced Plant Cell Suspension Cultures\u201d, Biotechnology Progress, 21: 321 – 328 (2005).<\/li>\n<\/ul>\n<\/div>\n

                2002<\/h2>\n
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                • Rajesh Krishnan, Karen A. McDonald, Abhaya M. Dandekar, Alan P. Jackman and Bryce Falk, \u201cExpression of Recombinant Trichosanthin, a Ribosome-inactivating Protein, in Transgenic Tobacco\u201d, Journal of Biotechnology, 97:69-88 (2002).<\/li>\n
                • Melody M. Trexler, Karen A. McDonald and Alan P. Jackman, \u201cBioreactor Production of Human Alpha-1-Antitrypsin Using Metabolically Regulated Plant Cell Cultures\u201d, Biotechnology Progress 18: 501-508 (2002).<\/li>\n<\/ul>\n<\/div>\n

                  2001<\/h2>\n
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                  • Karen A. McDonald, Alan P. Jackman and Shaelyn Hurst, “Characterization of Plant Suspension Cultures Using the Focused Beam Reflectance Technique”,Biotechnology Letters, 23: 317-324 (2001).<\/li>\n
                  • J. C. Wong, K. A. McDonald, and A. Palazoglu, “Classification of Abnormal Plant Operation Using Multiple Process Variable Trends”, Journal of Process Control, 11:409-418 (2001).<\/li>\n<\/ul>\n<\/div>\n

                    1999<\/h2>\n
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                    • R. Krishnan, A.P. Jackman, A.M. Dandekar, and K.A. McDonald, “Expression of Trichosanthin in Transgenic Tobacco Plants and Suspension Cultures”,Abstracts of Papers American Chemical Society, 217: BIOT Paper 125 (1999).<\/li>\n<\/ul>\n
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                      • Karen A. McDonald, Michael R. Stoner, N. Remi Shih and Alan P. Jackman, \u201cTrichosanthes kirilowii<\/em> Plant Cell Culture in a 5 Liter Bioreactor\u201d in Plant Cell and Tissue Culture for the Production of Food Ingredients, Edited by Fu, T.-J., Curtis, W.R. and Singh, G., Kluwer Academic\/Plenum Publishers, NY (1999).<\/li>\n<\/ul>\n<\/div>\n

                        1998<\/h2>\n
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                        • J. C. Wong, K. A. McDonald and A. Palazoglu, “Classification of Process Trends Based on Fuzzified Symbolic Representation and Hidden Markov Models”, J. Process Control, 8:395-408 (1998).<\/li>\n
                        • N.-J. Remi Shih, K. A. McDonald, T. Girbes, R. Iglesias, A. Kolhoff and A.P. Jackman, “Ribosome-Inactivating Proteins (RIPs) of Wild Oregon Cucumber (Marah oreganus<\/em>) “, Biological Chemistry, 379: 721-725 (1998).<\/li>\n
                        • N.-J.\u00a0 Remi Shih, K. A. McDonald, A. M. Dandekar, T. Girbes, R. Iglesias, A.P. Jackman, \u201cA Novel Type-1Ribosome-Inactivating Protein Isolated from the Supernatant of Transformed Suspension Cultures of Trichosanthes kirilowii<\/em>\u201d, Plant Cell Reports 17:531-537 (1998).<\/li>\n<\/ul>\n
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                          • S. Dagdeviren, K. A. McDonald, and A. P. Jackman, “Production of Sulfolipids from Cyanobacteria in Photobioreactors”, in BioHydrogen, Edited by O.R. Zaborsky, Plenum Press, New York, NY, pp 459-466 (1998).<\/li>\n<\/ul>\n<\/div>\n

                            1997<\/h2>\n
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                            • J. C. Wong, K.A. McDonald, A. Palazoglu and T. Wada, “Application of a Fuzzy Triangular Representation and Hidden Markov Models Classification in the Detection of Abnormal Situations in Refining Processes,” Control 97 Proceedings, Sydney, Australia, October 1997, pp 566-571 (1997).<\/li>\n
                            • Michael R. Stoner, Christopher A. Humphrey, Danielle J. Coutts, N.-J. Remi Shih, Karen A. McDonald and Alan. P. Jackman, \u201cKinetics of Growth and Ribsome-Inactivating Protein Production from Trichosanthes kirilowii<\/em> Plant Cell Cultures in a 5 Liter Bioreactor.” Biotechnology Progress 13:799-804 (1997).<\/li>\n
                            • N.-J. Remi Shih and K. A. McDonald, \u201cPurification and Characterization of Chitinases from Transformed Callus Suspension Cultures of Trichosanthes kirilowii<\/em>Maxim.\u201d Journal of Fermentation and Bioengineering, 84:\u00a0 28-34 (1997)<\/li>\n
                            • J.C. Wong, K. A. McDonald, A. Palazoglu and T. Wada, \u201cA New Method for Classifying Process Trends Based on Fuzzy Triangular Representation and Hidden Markov Models, IFAC Symposium ADCHEM \u201997 Proceedings (1997).<\/li>\n
                            • S.D. Archer, K. A. McDonald and A.P. Jackman, \u201cEffect of Light Irradiance on the Production of Sulfolipids from Anabaena 7120 in a Fed-Batch Photobioreactor,\u201d Applied Biochemistry and Biotechnology, 67:139-152 (1997)<\/li>\n
                            • G. L. Young, K. A. McDonald and A. Palazoglu, \u201cThermal Stress Analysis of Crystal Growth in a Horizontal Bridgman Furnace\u201d Journal of Crystal Growth, 171: 361-372 (1997)<\/li>\n
                            • K. Fruzzetti, A. Palazoglu, and K.A. McDonald, “Nonlinear Model Predictive Control Using Hammerstein Models”\u00a0 Journal of Control 7:31-41 (1997).<\/li>\n<\/ul>\n
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                              • N.-J.\u00a0 Remi Shih, K. A. McDonald, A. P. Jackman, T. Girbes, R. Iglesias, \u201cBifunctional Plant Defence Enzymes with Chitinase and Ribosome Inactivating Activities from Trichsoanthes kirilowii<\/em> Cell Cultures\u201d, Plant Science 130: 145-150 (1997).<\/li>\n<\/ul>\n<\/div>\n

                                1996<\/h2>\n
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                                • K. McDonald, “Biochemical Engineering”, Engineering Horizons, Spring 1996, pg 11 (1996)<\/li>\n
                                • N. Bhatia, K.A. McDonald, A.P. Jackman and A.M. Dandekar, “A Simplified Procedure for the Purification of Trichosanthin (A Type I Ribosome Inactivating Protein) from Trichosanthes kirilowii<\/em> Root Tubers”, Protein Expression and Purification, 7:143-146 (1996).<\/li>\n<\/ul>\n<\/div>\n

                                  1995<\/h2>\n
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                                  • N. van Klaveren, A.N. Palazoglu, K.A. McDonald and A.T. Touchstone, \u201cInteractive Computer Simulations for Integrated Learning,\u201d Proceedings of the Fourth International Conference on Foundations of Computer Aided Process Design, AIChE Symposium Series, Vol. 91, 344-347 (1995).<\/li>\n
                                  • K.A. McDonald, A.P. Jackman, J.E. Thorup and A.M. Dandekar, \u201cPlant Callus as a Source of Biochemicals\u201d, Applied Biochemistry and Biotechnology, 54:\u00a0 93-108 (1995).<\/li>\n
                                  • R. Henes, M.M Bland, J. Darby and K. A. McDonald, \u201cImproving the Academic Environment for Women Engineering Students through Faculty Workshops,\u201d \u00a0J. Engr. Education, 84: 59-67 (1995)<\/li>\n<\/ul>\n